PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928414.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 420aa    MW: 46019.8 Da    PI: 7.6041
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928414.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.81.3e-115075126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    +++++C +++rtG+C yG++C+++H+
  XP_010928414.1 50 PGEPNCIYYLRTGYCGYGSNCRYNHP 75
                    5789*********************9 PP

2zf-CCCH37.73.3e-1293118227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C+ff++tGtCk+G++Ck++H++
  XP_010928414.1  93 GQPDCQFFLKTGTCKFGATCKYHHPR 118
                     6899********************96 PP

3zf-CCCH36.21e-11141163527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C+++++tG Ck+G  CkF+H++
  XP_010928414.1 141 SCPYYMKTGLCKFGIACKFNHPQ 163
                     6********************97 PP

4zf-CCCH40.44.8e-13280305227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tG Ck+G +CkF+H++
  XP_010928414.1 280 DQPECQYYMKTGSCKFGTSCKFHHPK 305
                     689*********************96 PP

5zf-CCCH352.4e-11324350127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C f++ +G CkyG++CkF H++
  XP_010928414.1 324 PGQPVCTFYSMYGSCKYGSTCKFDHPF 350
                     5789*********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.5824977IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-54976IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-95175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-65475IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-45574IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.74191119IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-791118IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-993118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-696121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-597119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6135165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.835136164IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4138163IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9140163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4141162IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5278305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.042278306IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-10280305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6281306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5284305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6322349IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-6323350IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474323351IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8325350IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4328348IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MPDTRPVQSN AVANSSDACT DNLEEAMWQL KVEDCKGGAG AFPNLYPDRP GEPNCIYYLR  60
TGYCGYGSNC RYNHPTYIGQ GTLYSGELPE RDGQPDCQFF LKTGTCKFGA TCKYHHPRDK  120
HEARPVQLNF LGLPMRKEEK SCPYYMKTGL CKFGIACKFN HPQPTHHAAM LPVTGPSTNG  180
STGSSVATPS GQPLVAGLSA WSLSTIACTS NPRMQGLPYM SLVLPLTQGT MPVQHGWSMY  240
MGGVNHVPST DVVGPNQISN PKHPALLGSS TPVNFPERPD QPECQYYMKT GSCKFGTSCK  300
FHHPKERNQE AICTIGPLGL PLRPGQPVCT FYSMYGSCKY GSTCKFDHPF MGYYNYSLPA  360
LSVPDPPVLF PKTVRLPDQH VKYETGDEPQ DSNDHNHGNP STQASPSHTA HSESPGKYSD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928414.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like
SwissprotQ9SWF92e-94ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLM0SII71e-177M0SII7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P28210_0011e-177(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.25e-85C3H family protein